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The MacKenzie ontology comprises four modules. In each module, the relationships between ontological terms (classes) are defined. This is done in the following manner. The concepts are given names that consist of the modules and a number that is incremented for each subsequent module. There is a
unique integer identifier for each concept. This unique identifier is a combination of the module name and a number between 1 and 4. The number between 1 and 4 is incremented for each module,
which has a name.

Sites for Ontologies

Ontology or Web Ontology Language (OWL) is the standard language for describing the structure of an ontology on the web and has been adopted by the OBO Foundry project. Some of the key features of OWL include:

Syntax

OWL-DL is a standard language for specifying and reasoning with an ontology. It has been defined by the W3C and is supported by most of the ontology hosting sites. There are also tools for ontology editors that can display ontologies in OWL.

Interfaces

All ontologies (i.e., ontology modules) in OntoTools are implemented using Java interfaces. This allows you to focus on the representation of your ontology and to avoid having to maintain the ontology module code itself. This is especially useful when you need to update an ontology. You simply change the ontology code and regenerate the ontology module.

Using OntoTools to load an ontology

Once you have created an ontology and exported it, you can load it with OntoTools using the java command line.

java -jar ontology-exporter.jar -e ontology-export.owl -n ontology-module-name -o ontology-output-folder

The ontology-output-folder is where the ontology will be saved and its location may differ on the
machine you are working on.

The ontology-exporter will perform the following steps:

The ontology-export.owl will be read.

The ontology-export.owl will be saved as a list of maps.

The Java class InfModel_OWL_Class can be used to export the ontology into a model. It has the following signature:

public Map> getModels()

A sample Java class InfModel 70238732e0

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